STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106594962Fibrinogen-like protein 1. (265 aa)    
Predicted Functional Partners:
vps36
Vacuolar protein-sorting-associated protein 36.
      
 0.553
kansl2
KAT8 regulatory NSL complex subunit 2.
    
 0.534
pdzd11
PDZ domain-containing protein 11 isoform X2.
    
 
 0.450
pdzd11-2
PDZ domain-containing protein 11 isoform X3.
    
 
 0.450
ENSSSAP00000078840
Si:dkey-114l24.2.
    
 0.420
cd302
CD302 antigen.
    
 0.408
LOC106586182
CD302 antigen-like isoform X1.
    
 0.408
mcrs1
Microspherule protein 1.
    
 0.405
LOC106583247
Microspherule protein 1-like.
    
 0.405
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.