STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106561252Mothers against decapentaplegic homolog. (377 aa)    
Predicted Functional Partners:
LOC106601396
E3 ubiquitin-protein ligase.
    
 0.988
SMURF2
E3 ubiquitin-protein ligase.
    
 0.988
LOC106585370
Mothers against decapentaplegic homolog.
   
0.947
LOC106580048
Mothers against decapentaplegic homolog.
   
0.947
ENSSSAP00000011090
SMAD specific E3 ubiquitin protein ligase 2.
    
 0.885
LOC106564903
E3 ubiquitin-protein ligase SMURF2-like.
    
 0.885
smad9
Mothers against decapentaplegic homolog.
   
0.842
smad1
Mothers against decapentaplegic homolog.
   
0.842
smad5
Mothers against decapentaplegic homolog.
   
0.842
SMAD1
Mothers against decapentaplegic homolog 1-like.
   
0.842
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.