STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106585758Putative tRNA pseudouridine synthase Pus10 isoform X1. (539 aa)    
Predicted Functional Partners:
abitram
F54F2.7.
    
   0.828
ENSSSAP00000091384
annotation not available
    
   0.828
pus7
Pseudouridylate synthase 7 homolog isoform X1.
   
  
 0.631
PUS7
Pseudouridylate synthase 7 homolog isoform X1.
   
  
 0.631
LOC106577940
H/ACA ribonucleoprotein complex subunit 3-like.
     
 0.618
LOC106608971
H/ACA ribonucleoprotein complex subunit 3 isoform X2.
     
 0.618
cenph
rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family.
     
 0.612
thumpd2
THUMP domain-containing protein 2.
      
 0.599
tyw3
LOW QUALITY PROTEIN: tRNA wybutosine-synthesizing protein 3 homolog.
      
 0.595
LOC106575893
Interleukin-18 receptor accessory protein-like isoform X1.
      
 0.592
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
Server load: low (34%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.