LOC106604082 protein (Salmo salar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC106604082

Endothelin B receptor-like; Belongs to the G-protein coupled receptor 1 family. (427 aa)

Predicted Functional Partners:

LOC106570392

0.995

LOC106589028

0.995

ENSSSAP00000080569

0.970

ENSSSAP00000094062

0.923

LOC106600156

0.901

LOC106569464

0.900

ENSSSAP00000014583

0.894

LOC106588640

0.894

LOC106580086

0.825

LOC106580085

0.825

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSSAP00000014583	ENSSSAP00000080569	ENSSSAP00000014583	ENSSSAP00000080569	Endothelin-2-like.	annotation not available	0.739
ENSSSAP00000014583	LOC106569464	ENSSSAP00000014583	ENSSSAP00000053046	Endothelin-2-like.	Kidney mitochondrial carrier protein 1-like; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.894
ENSSSAP00000014583	LOC106570392	ENSSSAP00000014583	ENSSSAP00000019078	Endothelin-2-like.	Endothelin-1-like.	0.619
ENSSSAP00000014583	LOC106589028	ENSSSAP00000014583	ENSSSAP00000076828	Endothelin-2-like.	Uncharacterized protein LOC106589028.	0.608
ENSSSAP00000014583	LOC106600156	ENSSSAP00000014583	ENSSSAP00000035222	Endothelin-2-like.	Endothelin B receptor-like; Belongs to the G-protein coupled receptor 1 family.	0.894
ENSSSAP00000014583	LOC106604082	ENSSSAP00000014583	ENSSSAP00000002874	Endothelin-2-like.	Endothelin B receptor-like; Belongs to the G-protein coupled receptor 1 family.	0.894
ENSSSAP00000080569	ENSSSAP00000014583	ENSSSAP00000080569	ENSSSAP00000014583	annotation not available	Endothelin-2-like.	0.739
ENSSSAP00000080569	LOC106569464	ENSSSAP00000080569	ENSSSAP00000053046	annotation not available	Kidney mitochondrial carrier protein 1-like; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.970
ENSSSAP00000080569	LOC106570392	ENSSSAP00000080569	ENSSSAP00000019078	annotation not available	Endothelin-1-like.	0.799
ENSSSAP00000080569	LOC106580085	ENSSSAP00000080569	ENSSSAP00000052861	annotation not available	Guanine nucleotide-binding protein subunit alpha-14-like.	0.511
ENSSSAP00000080569	LOC106580086	ENSSSAP00000080569	ENSSSAP00000052837	annotation not available	Guanine nucleotide-binding protein G(Q) subunit alpha-like.	0.511
ENSSSAP00000080569	LOC106588640	ENSSSAP00000080569	ENSSSAP00000043335	annotation not available	Endothelin-2-like.	0.740
ENSSSAP00000080569	LOC106589028	ENSSSAP00000080569	ENSSSAP00000076828	annotation not available	Uncharacterized protein LOC106589028.	0.799
ENSSSAP00000080569	LOC106600156	ENSSSAP00000080569	ENSSSAP00000035222	annotation not available	Endothelin B receptor-like; Belongs to the G-protein coupled receptor 1 family.	0.970
ENSSSAP00000080569	LOC106604082	ENSSSAP00000080569	ENSSSAP00000002874	annotation not available	Endothelin B receptor-like; Belongs to the G-protein coupled receptor 1 family.	0.970
ENSSSAP00000094062	LOC106569464	ENSSSAP00000094062	ENSSSAP00000053046	Endothelin-1-like.	Kidney mitochondrial carrier protein 1-like; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.925
ENSSSAP00000094062	LOC106570392	ENSSSAP00000094062	ENSSSAP00000019078	Endothelin-1-like.	Endothelin-1-like.	0.901
ENSSSAP00000094062	LOC106589028	ENSSSAP00000094062	ENSSSAP00000076828	Endothelin-1-like.	Uncharacterized protein LOC106589028.	0.900
ENSSSAP00000094062	LOC106600156	ENSSSAP00000094062	ENSSSAP00000035222	Endothelin-1-like.	Endothelin B receptor-like; Belongs to the G-protein coupled receptor 1 family.	0.925
ENSSSAP00000094062	LOC106604082	ENSSSAP00000094062	ENSSSAP00000002874	Endothelin-1-like.	Endothelin B receptor-like; Belongs to the G-protein coupled receptor 1 family.	0.923