STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106602931Steroid receptor RNA activator 1-like isoform X1. (275 aa)    
Predicted Functional Partners:
LOC106571976
mRNA-decapping enzyme 1A-like isoform X1.
      
 0.599
LOC106605773
Hepatic leukemia factor-like isoform X2.
    
 
 0.517
LOC106570004
Hepatic leukemia factor-like.
    
 
 0.517
pus1
tRNA pseudouridine synthase A.
      
 0.510
PUS1
tRNA pseudouridine synthase A, mitochondrial-like isoform X1.
      
 0.510
ube2l3
Ubiquitin-conjugating enzyme E2 L3-like; Belongs to the ubiquitin-conjugating enzyme family.
    
 
 0.473
LOC106604140
Matrin-3-like isoform X2.
      
 0.472
LOC106612286
Matrin-3-like isoform X1.
      
 0.472
ENSSSAP00000006959
annotation not available
      
 0.435
ENSSSAP00000066363
annotation not available
      
 0.435
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.