STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cln3Battenin. (440 aa)    
Predicted Functional Partners:
LOC106581067
Ribosome maturation protein SBDS.
   
 
 0.664
SBDS
Ribosome maturation protein SBDS-like.
    
 
 0.663
cln5
Ceroid-lipofuscinosis neuronal protein 5.
   
 
 0.641
LOC106570032
Palmitoyl-protein thioesterase 1-like.
    
 
 0.618
LOC106588481
Palmitoyl-protein thioesterase 1-like.
    
 
 0.618
tpp1
Tripeptidyl-peptidase 1 precursor.
   
  
 0.615
ENSSSAP00000021212
annotation not available
    
 
 0.613
HOOK2
Protein Hook homolog 2-like isoform X2.
    
 
 0.613
LOC106601330
Protein Hook homolog 2-like isoform X1.
    
 
 0.613
mfsd8
Major facilitator superfamily domain-containing protein 8.
    
 
 0.612
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.