STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106598946snRNA-activating protein complex subunit 1-like. (346 aa)    
Predicted Functional Partners:
snapc5
snRNA-activating protein complex subunit 5.
    
 0.999
LOC106585647
snRNA-activating protein complex subunit 4-like isoform X2.
    
 0.996
LOC106580121
snRNA-activating protein complex subunit 4-like.
    
 0.996
ENSSSAP00000010257
annotation not available
   
 0.991
LOC106610302
snRNA-activating protein complex subunit 3-like.
   
 0.991
ENSSSAP00000044562
annotation not available
   
 0.991
LOC106568989
Transcription initiation factor IIB-like.
    
 0.980
tf2b
Transcription initiation factor IIB.
    
 0.980
tbp
TATA-box-binding protein isoform X1.
   
 0.934
LOC106602273
TATA box-binding protein-like protein 2.
   
 0.930
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.