STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dph6Diphthine--ammonia ligase isoform X1. (619 aa)    
Predicted Functional Partners:
LOC106561350
CCR4-NOT transcription complex subunit 1-like isoform X11.
    
 
 0.725
ENSSSAP00000080004
CCR4-NOT transcription complex, subunit 1.
    
 
 0.725
LOC106605075
L-threonine ammonia-lyase-like isoform X1.
  
 0.700
LOC106601062
L-serine dehydratase/L-threonine deaminase-like.
  
 0.700
LOC106575990
Phenylserine dehydratase-like isoform X1.
  
 0.700
LOC106576769
Serine racemase-like.
  
 0.700
LOC106580394
L-serine dehydratase/L-threonine deaminase-like.
  
 0.700
SDS
L-serine dehydratase/L-threonine deaminase-like.
  
 0.700
LOC106609840
CCR4-NOT transcription complex subunit 4-like.
    
 
 0.699
cnot9
Cell differentiation protein RCD1 homolog isoform X1.
    
 
 0.699
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.