ENSSSAP00000003185 protein (Salmo salar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSSSAP00000003185

Golgi associated, gamma adaptin ear containing, ARF binding protein 3b. (667 aa)

Predicted Functional Partners:

LOC106567675

0.913

LOC106603450

0.913

LOC106562992

0.894

LOC106571395

0.864

LOC106607799

0.864

arf6

0.818

LOC106608083

0.818

LOC106571580

0.818

mprd

0.777

LOC106576801

0.777

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSSAP00000003185	LOC106562992	ENSSSAP00000003185	ENSSSAP00000031692	Golgi associated, gamma adaptin ear containing, ARF binding protein 3b.	polyubiquitin-B.	0.894
ENSSSAP00000003185	LOC106567675	ENSSSAP00000003185	ENSSSAP00000016311	Golgi associated, gamma adaptin ear containing, ARF binding protein 3b.	Rab GTPase-binding effector protein 1-like isoform X1.	0.913
ENSSSAP00000003185	LOC106571395	ENSSSAP00000003185	ENSSSAP00000076748	Golgi associated, gamma adaptin ear containing, ARF binding protein 3b.	Cation-independent mannose-6-phosphate receptor-like isoform X1.	0.864
ENSSSAP00000003185	LOC106571580	ENSSSAP00000003185	ENSSSAP00000080143	Golgi associated, gamma adaptin ear containing, ARF binding protein 3b.	ADP-ribosylation factor 6.	0.818
ENSSSAP00000003185	LOC106576801	ENSSSAP00000003185	ENSSSAP00000015668	Golgi associated, gamma adaptin ear containing, ARF binding protein 3b.	Cation-dependent mannose-6-phosphate receptor-like.	0.777
ENSSSAP00000003185	LOC106603450	ENSSSAP00000003185	ENSSSAP00000075273	Golgi associated, gamma adaptin ear containing, ARF binding protein 3b.	Rab GTPase-binding effector protein 1-like isoform X2.	0.913
ENSSSAP00000003185	LOC106607799	ENSSSAP00000003185	ENSSSAP00000084350	Golgi associated, gamma adaptin ear containing, ARF binding protein 3b.	Cation-independent mannose-6-phosphate receptor-like.	0.864
ENSSSAP00000003185	LOC106608083	ENSSSAP00000003185	ENSSSAP00000032262	Golgi associated, gamma adaptin ear containing, ARF binding protein 3b.	ADP-ribosylation factor 6-like; Belongs to the small GTPase superfamily. Arf family.	0.818
ENSSSAP00000003185	arf6	ENSSSAP00000003185	ENSSSAP00000017542	Golgi associated, gamma adaptin ear containing, ARF binding protein 3b.	ADP-ribosylation factor 6-like; Belongs to the small GTPase superfamily. Arf family.	0.818
ENSSSAP00000003185	mprd	ENSSSAP00000003185	ENSSSAP00000006453	Golgi associated, gamma adaptin ear containing, ARF binding protein 3b.	Cation-dependent mannose-6-phosphate receptor precursor.	0.777
LOC106562992	ENSSSAP00000003185	ENSSSAP00000031692	ENSSSAP00000003185	polyubiquitin-B.	Golgi associated, gamma adaptin ear containing, ARF binding protein 3b.	0.894
LOC106567675	ENSSSAP00000003185	ENSSSAP00000016311	ENSSSAP00000003185	Rab GTPase-binding effector protein 1-like isoform X1.	Golgi associated, gamma adaptin ear containing, ARF binding protein 3b.	0.913
LOC106567675	LOC106603450	ENSSSAP00000016311	ENSSSAP00000075273	Rab GTPase-binding effector protein 1-like isoform X1.	Rab GTPase-binding effector protein 1-like isoform X2.	0.900
LOC106571395	ENSSSAP00000003185	ENSSSAP00000076748	ENSSSAP00000003185	Cation-independent mannose-6-phosphate receptor-like isoform X1.	Golgi associated, gamma adaptin ear containing, ARF binding protein 3b.	0.864
LOC106571395	LOC106571580	ENSSSAP00000076748	ENSSSAP00000080143	Cation-independent mannose-6-phosphate receptor-like isoform X1.	ADP-ribosylation factor 6.	0.462
LOC106571395	LOC106576801	ENSSSAP00000076748	ENSSSAP00000015668	Cation-independent mannose-6-phosphate receptor-like isoform X1.	Cation-dependent mannose-6-phosphate receptor-like.	0.984
LOC106571395	LOC106607799	ENSSSAP00000076748	ENSSSAP00000084350	Cation-independent mannose-6-phosphate receptor-like isoform X1.	Cation-independent mannose-6-phosphate receptor-like.	0.900
LOC106571395	LOC106608083	ENSSSAP00000076748	ENSSSAP00000032262	Cation-independent mannose-6-phosphate receptor-like isoform X1.	ADP-ribosylation factor 6-like; Belongs to the small GTPase superfamily. Arf family.	0.462
LOC106571395	arf6	ENSSSAP00000076748	ENSSSAP00000017542	Cation-independent mannose-6-phosphate receptor-like isoform X1.	ADP-ribosylation factor 6-like; Belongs to the small GTPase superfamily. Arf family.	0.462
LOC106571395	mprd	ENSSSAP00000076748	ENSSSAP00000006453	Cation-independent mannose-6-phosphate receptor-like isoform X1.	Cation-dependent mannose-6-phosphate receptor precursor.	0.984