STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RFNGBeta-1,3-N-acetylglucosaminyltransferase. (408 aa)    
Predicted Functional Partners:
LOC106585434
Negative elongation factor B-like.
   
 0.779
LOC106580000
Negative elongation factor B-like.
   
 0.779
polr2h
DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.
    
  0.770
LOC106584380
Neurogenic locus notch homolog protein 2-like isoform X1.
    
 0.728
LOC106613830
LOW QUALITY PROTEIN: neurogenic locus notch homolog protein 2-like.
    
 0.728
LOC106579992
Neurogenic locus notch homolog protein 1-like isoform X1.
    
 0.722
NOTCH1
Neurogenic locus notch homolog protein 1-like isoform X1.
    
 0.722
ENSSSAP00000028146
Neurogenic locus notch homolog protein 1-like.
    
  0.676
LOC106601222
DNA-directed RNA polymerases I, II, and III subunit RPABC2.
    
 0.663
LOC106607142
DNA-directed RNA polymerases I, II, and III subunit RPABC2-like.
    
 0.663
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.