spred1 protein (Salmo salar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

spred1

Sprouty-related, EVH1 domain-containing protein 1. (433 aa)

Predicted Functional Partners:

LOC106613084

0.855

LOC106603288

0.855

LOC106567758

0.855

ENSSSAP00000004424

0.649

LOC106607573

0.649

LOC106571199

0.649

rash

0.572

HRAS

0.572

LOC106601908

0.567

CSDE1

0.567

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CSDE1	ENSSSAP00000004424	ENSSSAP00000032879	ENSSSAP00000004424	Cold shock domain-containing protein E1-like isoform X7.	annotation not available	0.465
CSDE1	LOC106567758	ENSSSAP00000032879	ENSSSAP00000103317	Cold shock domain-containing protein E1-like isoform X7.	Neurofibromin isoform X6.	0.799
CSDE1	LOC106571199	ENSSSAP00000032879	ENSSSAP00000100043	Cold shock domain-containing protein E1-like isoform X7.	Serine/threonine-protein kinase Nek2-like.	0.465
CSDE1	LOC106603288	ENSSSAP00000032879	ENSSSAP00000063392	Cold shock domain-containing protein E1-like isoform X7.	Neurofibromin-like isoform X2.	0.799
CSDE1	LOC106607573	ENSSSAP00000032879	ENSSSAP00000061002	Cold shock domain-containing protein E1-like isoform X7.	Serine/threonine-protein kinase Nek2-like.	0.465
CSDE1	LOC106613084	ENSSSAP00000032879	ENSSSAP00000062149	Cold shock domain-containing protein E1-like isoform X7.	Neurofibromin-like isoform X5.	0.799
CSDE1	spred1	ENSSSAP00000032879	ENSSSAP00000003334	Cold shock domain-containing protein E1-like isoform X7.	Sprouty-related, EVH1 domain-containing protein 1.	0.567
ENSSSAP00000004424	CSDE1	ENSSSAP00000004424	ENSSSAP00000032879	annotation not available	Cold shock domain-containing protein E1-like isoform X7.	0.465
ENSSSAP00000004424	HRAS	ENSSSAP00000004424	ENSSSAP00000105650	annotation not available	GTPase HRas-like.	0.465
ENSSSAP00000004424	LOC106601908	ENSSSAP00000004424	ENSSSAP00000032578	annotation not available	GTPase HRas-like isoform X1.	0.465
ENSSSAP00000004424	rash	ENSSSAP00000004424	ENSSSAP00000103505	annotation not available	GTPase HRas isoform X1.	0.465
ENSSSAP00000004424	spred1	ENSSSAP00000004424	ENSSSAP00000003334	annotation not available	Sprouty-related, EVH1 domain-containing protein 1.	0.649
HRAS	ENSSSAP00000004424	ENSSSAP00000105650	ENSSSAP00000004424	GTPase HRas-like.	annotation not available	0.465
HRAS	LOC106567758	ENSSSAP00000105650	ENSSSAP00000103317	GTPase HRas-like.	Neurofibromin isoform X6.	0.800
HRAS	LOC106571199	ENSSSAP00000105650	ENSSSAP00000100043	GTPase HRas-like.	Serine/threonine-protein kinase Nek2-like.	0.465
HRAS	LOC106603288	ENSSSAP00000105650	ENSSSAP00000063392	GTPase HRas-like.	Neurofibromin-like isoform X2.	0.927
HRAS	LOC106607573	ENSSSAP00000105650	ENSSSAP00000061002	GTPase HRas-like.	Serine/threonine-protein kinase Nek2-like.	0.465
HRAS	LOC106613084	ENSSSAP00000105650	ENSSSAP00000062149	GTPase HRas-like.	Neurofibromin-like isoform X5.	0.927
HRAS	rash	ENSSSAP00000105650	ENSSSAP00000103505	GTPase HRas-like.	GTPase HRas isoform X1.	0.900
HRAS	spred1	ENSSSAP00000105650	ENSSSAP00000003334	GTPase HRas-like.	Sprouty-related, EVH1 domain-containing protein 1.	0.572