STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106600708E3 ubiquitin-protein ligase RNF25-like. (541 aa)    
Predicted Functional Partners:
znf408
Zinc finger protein 408 isoform X1.
   
    0.680
NUP214
Nuclear pore complex protein Nup214-like isoform X2.
      
 0.601
LOC106607826
Cyclin-dependent kinase 1-like; Belongs to the protein kinase superfamily.
      
 0.577
ENSSSAP00000000236
annotation not available
    
 
 0.569
UBE2D1
Ubiquitin-conjugating enzyme E2 D4-like isoform X1; Belongs to the ubiquitin-conjugating enzyme family.
    
 
 0.569
ube2d2
Ubiquitin-conjugating enzyme E2 D2 isoform X2; Belongs to the ubiquitin-conjugating enzyme family.
    
 
 0.569
LOC106560770
Ubiquitin-conjugating enzyme E2 D4-like; Belongs to the ubiquitin-conjugating enzyme family.
    
 
 0.569
ube2d2-2
Ubiquitin-conjugating enzyme E2 D2 isoform X1; Belongs to the ubiquitin-conjugating enzyme family.
    
 
 0.569
ube2d2-3
Ubiquitin-conjugating enzyme E2 D2.
    
 
 0.569
LOC106611705
Ubiquitin-conjugating enzyme E2 D2-like isoform X2; Belongs to the ubiquitin-conjugating enzyme family.
    
 
 0.569
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.