STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
chmp6Charged multivesicular body protein 6. (205 aa)    
Predicted Functional Partners:
vps36
Vacuolar protein-sorting-associated protein 36.
   
 0.985
LOC106610650
Vacuolar protein-sorting-associated protein 25-like.
   
 0.981
vps25
Vacuolar protein-sorting-associated protein 25.
   
 0.981
snf8
Vacuolar-sorting protein SNF8; Component of the endosomal sorting complex required for transport II (ESCRT-II), which is required for multivesicular body (MVB) formation and sorting of endosomal cargo proteins into MVBs. Belongs to the SNF8 family.
    
 0.980
Snf8
ESCRT-II complex subunit VPS22.
    
 0.980
LOC106579304
Charged multivesicular body protein 2a-like.
   
 0.938
LOC106589279
Charged multivesicular body protein 2A.
   
 0.938
CHMP3
Charged multivesicular body protein 3.
    
 0.932
chmp3
Charged multivesicular body protein 3.
    
 0.932
LOC106566692
Charged multivesicular body protein 4b-like.
    
0.917
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.