LOC106601650 protein (Salmo salar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC106601650

Tumor necrosis factor receptor superfamily member 16-like. (240 aa)

Predicted Functional Partners:

LOC106601548

0.998

ntf3

0.984

RIPK2

0.956

LOC106587145

0.956

LOC106562048

0.956

LOC106568754

0.956

LOC106592035

0.937

LOC106562692

0.937

LOC106562229

0.920

LOC106587422

0.920

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC106562048	LOC106562229	ENSSSAP00000081648	ENSSSAP00000023914	Receptor-interacting serine/threonine-protein kinase 2-like isoform X2.	Tumor necrosis factor receptor type 1-associated DEATH domain protein-like.	0.692
LOC106562048	LOC106562692	ENSSSAP00000081648	ENSSSAP00000029190	Receptor-interacting serine/threonine-protein kinase 2-like isoform X2.	TNF receptor-associated factor 6-like.	0.919
LOC106562048	LOC106587422	ENSSSAP00000081648	ENSSSAP00000120048	Receptor-interacting serine/threonine-protein kinase 2-like isoform X2.	Tumor necrosis factor receptor type 1-associated DEATH domain protein.	0.692
LOC106562048	LOC106592035	ENSSSAP00000081648	ENSSSAP00000020342	Receptor-interacting serine/threonine-protein kinase 2-like isoform X2.	TNF receptor-associated factor 6-like.	0.919
LOC106562048	LOC106601650	ENSSSAP00000081648	ENSSSAP00000003484	Receptor-interacting serine/threonine-protein kinase 2-like isoform X2.	Tumor necrosis factor receptor superfamily member 16-like.	0.956
LOC106562229	LOC106562048	ENSSSAP00000023914	ENSSSAP00000081648	Tumor necrosis factor receptor type 1-associated DEATH domain protein-like.	Receptor-interacting serine/threonine-protein kinase 2-like isoform X2.	0.692
LOC106562229	LOC106562692	ENSSSAP00000023914	ENSSSAP00000029190	Tumor necrosis factor receptor type 1-associated DEATH domain protein-like.	TNF receptor-associated factor 6-like.	0.818
LOC106562229	LOC106568754	ENSSSAP00000023914	ENSSSAP00000090100	Tumor necrosis factor receptor type 1-associated DEATH domain protein-like.	Receptor-interacting serine/threonine-protein kinase 2-like isoform X1.	0.692
LOC106562229	LOC106587145	ENSSSAP00000023914	ENSSSAP00000055179	Tumor necrosis factor receptor type 1-associated DEATH domain protein-like.	Receptor-interacting serine/threonine-protein kinase 2-like.	0.692
LOC106562229	LOC106587422	ENSSSAP00000023914	ENSSSAP00000120048	Tumor necrosis factor receptor type 1-associated DEATH domain protein-like.	Tumor necrosis factor receptor type 1-associated DEATH domain protein.	0.900
LOC106562229	LOC106592035	ENSSSAP00000023914	ENSSSAP00000020342	Tumor necrosis factor receptor type 1-associated DEATH domain protein-like.	TNF receptor-associated factor 6-like.	0.847
LOC106562229	LOC106601650	ENSSSAP00000023914	ENSSSAP00000003484	Tumor necrosis factor receptor type 1-associated DEATH domain protein-like.	Tumor necrosis factor receptor superfamily member 16-like.	0.920
LOC106562229	RIPK2	ENSSSAP00000023914	ENSSSAP00000051785	Tumor necrosis factor receptor type 1-associated DEATH domain protein-like.	Receptor-interacting serine/threonine-protein kinase 2-like isoform X1.	0.692
LOC106562692	LOC106562048	ENSSSAP00000029190	ENSSSAP00000081648	TNF receptor-associated factor 6-like.	Receptor-interacting serine/threonine-protein kinase 2-like isoform X2.	0.919
LOC106562692	LOC106562229	ENSSSAP00000029190	ENSSSAP00000023914	TNF receptor-associated factor 6-like.	Tumor necrosis factor receptor type 1-associated DEATH domain protein-like.	0.818
LOC106562692	LOC106568754	ENSSSAP00000029190	ENSSSAP00000090100	TNF receptor-associated factor 6-like.	Receptor-interacting serine/threonine-protein kinase 2-like isoform X1.	0.919
LOC106562692	LOC106587145	ENSSSAP00000029190	ENSSSAP00000055179	TNF receptor-associated factor 6-like.	Receptor-interacting serine/threonine-protein kinase 2-like.	0.919
LOC106562692	LOC106587422	ENSSSAP00000029190	ENSSSAP00000120048	TNF receptor-associated factor 6-like.	Tumor necrosis factor receptor type 1-associated DEATH domain protein.	0.818
LOC106562692	LOC106592035	ENSSSAP00000029190	ENSSSAP00000020342	TNF receptor-associated factor 6-like.	TNF receptor-associated factor 6-like.	0.900
LOC106562692	LOC106601548	ENSSSAP00000029190	ENSSSAP00000002678	TNF receptor-associated factor 6-like.	Uncharacterized protein LOC106601548; Belongs to the NGF-beta family.	0.535