oga protein (Salmo salar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

oga

Protein O-GlcNAcase. (935 aa)

Predicted Functional Partners:

ENSSSAP00000018283

0.846

LOC106560571

0.843

LOC106568965

0.843

DDA1

0.843

ddb1

0.816

pprc1

0.812

LOC106576855

0.812

LOC106561926

0.790

cant1

0.705

OGT

0.696

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DDA1	ENSSSAP00000018283	ENSSSAP00000102730	ENSSSAP00000018283	DET1- and DDB1-associated protein 1-like.	Thymidine kinase 1, soluble.	0.777
DDA1	LOC106561926	ENSSSAP00000102730	ENSSSAP00000076675	DET1- and DDB1-associated protein 1-like.	DNA damage-binding protein 1-like isoform X1.	0.990
DDA1	LOC106576855	ENSSSAP00000102730	ENSSSAP00000116067	DET1- and DDB1-associated protein 1-like.	Peroxisome proliferator-activated receptor gamma coactivator-related protein 1-like.	0.812
DDA1	cant1	ENSSSAP00000102730	ENSSSAP00000028649	DET1- and DDB1-associated protein 1-like.	Soluble calcium-activated nucleotidase 1 isoform X1.	0.681
DDA1	ddb1	ENSSSAP00000102730	ENSSSAP00000098959	DET1- and DDB1-associated protein 1-like.	Salmo salar DNA damage-binding protein 1 (ddb1), mRNA.	0.993
DDA1	oga	ENSSSAP00000102730	ENSSSAP00000003552	DET1- and DDB1-associated protein 1-like.	Protein O-GlcNAcase.	0.843
DDA1	pprc1	ENSSSAP00000102730	ENSSSAP00000003654	DET1- and DDB1-associated protein 1-like.	Peroxisome proliferator-activated receptor gamma coactivator-related protein 1.	0.649
ENSSSAP00000018283	DDA1	ENSSSAP00000018283	ENSSSAP00000102730	Thymidine kinase 1, soluble.	DET1- and DDB1-associated protein 1-like.	0.777
ENSSSAP00000018283	LOC106560571	ENSSSAP00000018283	ENSSSAP00000029039	Thymidine kinase 1, soluble.	DET1- and DDB1-associated protein 1-like.	0.843
ENSSSAP00000018283	LOC106561926	ENSSSAP00000018283	ENSSSAP00000076675	Thymidine kinase 1, soluble.	DNA damage-binding protein 1-like isoform X1.	0.790
ENSSSAP00000018283	LOC106568965	ENSSSAP00000018283	ENSSSAP00000093003	Thymidine kinase 1, soluble.	DET1- and DDB1-associated protein 1.	0.843
ENSSSAP00000018283	LOC106576855	ENSSSAP00000018283	ENSSSAP00000116067	Thymidine kinase 1, soluble.	Peroxisome proliferator-activated receptor gamma coactivator-related protein 1-like.	0.812
ENSSSAP00000018283	cant1	ENSSSAP00000018283	ENSSSAP00000028649	Thymidine kinase 1, soluble.	Soluble calcium-activated nucleotidase 1 isoform X1.	0.669
ENSSSAP00000018283	ddb1	ENSSSAP00000018283	ENSSSAP00000098959	Thymidine kinase 1, soluble.	Salmo salar DNA damage-binding protein 1 (ddb1), mRNA.	0.814
ENSSSAP00000018283	oga	ENSSSAP00000018283	ENSSSAP00000003552	Thymidine kinase 1, soluble.	Protein O-GlcNAcase.	0.846
ENSSSAP00000018283	pprc1	ENSSSAP00000018283	ENSSSAP00000003654	Thymidine kinase 1, soluble.	Peroxisome proliferator-activated receptor gamma coactivator-related protein 1.	0.805
LOC106560571	ENSSSAP00000018283	ENSSSAP00000029039	ENSSSAP00000018283	DET1- and DDB1-associated protein 1-like.	Thymidine kinase 1, soluble.	0.843
LOC106560571	LOC106561926	ENSSSAP00000029039	ENSSSAP00000076675	DET1- and DDB1-associated protein 1-like.	DNA damage-binding protein 1-like isoform X1.	0.991
LOC106560571	LOC106576855	ENSSSAP00000029039	ENSSSAP00000116067	DET1- and DDB1-associated protein 1-like.	Peroxisome proliferator-activated receptor gamma coactivator-related protein 1-like.	0.812
LOC106560571	cant1	ENSSSAP00000029039	ENSSSAP00000028649	DET1- and DDB1-associated protein 1-like.	Soluble calcium-activated nucleotidase 1 isoform X1.	0.681