STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ccd82Coiled-coil domain-containing protein 82. (460 aa)    
Predicted Functional Partners:
LOC106574915
LOW QUALITY PROTEIN: GPALPP motifs-containing protein 1-like.
      
 0.595
lrrc39
Leucine-rich repeat-containing protein 39.
      
 0.506
lrrc2
Leucine-rich repeat-containing protein 2.
      
 0.506
LOC106588339
DNA-binding protein RFX5-like isoform X2.
      
 0.422
LOC106569903
DNA-binding protein RFX5-like isoform X1.
      
 0.422
ENSSSAP00000003421
annotation not available
      
 0.418
cssa13h11orf54
Ester hydrolase C11orf54 homolog isoform X1.
      
 0.418
wrnip1
ATPase WRNIP1 isoform X1.
      
 0.414
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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