STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NEUROD2Neurogenic differentiation factor. (359 aa)    
Predicted Functional Partners:
PAX2
Paired box 2.
   
  
 0.734
LOC106563295
Paired box protein Pax-8-like isoform X1.
   
  
 0.640
PAX8
Paired box protein Pax-8-like isoform X1.
   
  
 0.640
lhx1
LIM/homeobox protein Lhx1 isoform X1.
   
  
 0.639
LOC106565094
Contactin-2-like.
   
  
 0.634
LOC106583505
Contactin-2-like.
   
  
 0.634
LOC106584023
Low-density lipoprotein receptor-related protein 8-like isoform X1.
      
 0.622
stim1
Stromal interaction molecule 1 isoform X2.
      
 0.621
CDK5R1
Cyclin-dependent kinase 5 activator.
   
  
 0.593
insm1
Insulinoma-associated protein 1.
   
 0.578
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.