rnh2c protein (Salmo salar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

rnh2c

Ribonuclease H2 subunit C. (140 aa)

Predicted Functional Partners:

rnaseh2b

0.977

ENSSSAP00000014978

0.966

LOC106564474

0.963

ENSSSAP00000015114

0.962

ENSSSAP00000067401

0.593

FEN1

0.591

ENSSSAP00000066677

0.585

samhd1

0.585

LOC106570222

0.517

LOC106588593

0.517

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSSAP00000014978	ENSSSAP00000015114	ENSSSAP00000014978	ENSSSAP00000015114	Ribonuclease H2, subunit B.	annotation not available	0.988
ENSSSAP00000014978	ENSSSAP00000066677	ENSSSAP00000014978	ENSSSAP00000066677	Ribonuclease H2, subunit B.	Deoxynucleoside triphosphate triphosphohydrolase SAMHD1-like.	0.583
ENSSSAP00000014978	FEN1	ENSSSAP00000014978	ENSSSAP00000112685	Ribonuclease H2, subunit B.	Flap endonuclease 1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site- terminated flap. Acts as [...]	0.670
ENSSSAP00000014978	LOC106564474	ENSSSAP00000014978	ENSSSAP00000014400	Ribonuclease H2, subunit B.	Ribonuclease; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family.	0.988
ENSSSAP00000014978	LOC106570222	ENSSSAP00000014978	ENSSSAP00000017403	Ribonuclease H2, subunit B.	RNA polymerase II subunit A C-terminal domain phosphatase-like isoform X1.	0.485
ENSSSAP00000014978	LOC106588593	ENSSSAP00000014978	ENSSSAP00000027895	Ribonuclease H2, subunit B.	RNA polymerase II subunit A C-terminal domain phosphatase-like isoform X1.	0.485
ENSSSAP00000014978	rnh2c	ENSSSAP00000014978	ENSSSAP00000003850	Ribonuclease H2, subunit B.	Ribonuclease H2 subunit C.	0.966
ENSSSAP00000014978	samhd1	ENSSSAP00000014978	ENSSSAP00000108450	Ribonuclease H2, subunit B.	Deoxynucleoside triphosphate triphosphohydrolase SAMHD1 isoform X2.	0.583
ENSSSAP00000015114	ENSSSAP00000014978	ENSSSAP00000015114	ENSSSAP00000014978	annotation not available	Ribonuclease H2, subunit B.	0.988
ENSSSAP00000015114	ENSSSAP00000066677	ENSSSAP00000015114	ENSSSAP00000066677	annotation not available	Deoxynucleoside triphosphate triphosphohydrolase SAMHD1-like.	0.588
ENSSSAP00000015114	FEN1	ENSSSAP00000015114	ENSSSAP00000112685	annotation not available	Flap endonuclease 1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site- terminated flap. Acts as [...]	0.813
ENSSSAP00000015114	LOC106570222	ENSSSAP00000015114	ENSSSAP00000017403	annotation not available	RNA polymerase II subunit A C-terminal domain phosphatase-like isoform X1.	0.467
ENSSSAP00000015114	LOC106588593	ENSSSAP00000015114	ENSSSAP00000027895	annotation not available	RNA polymerase II subunit A C-terminal domain phosphatase-like isoform X1.	0.467
ENSSSAP00000015114	rnaseh2b	ENSSSAP00000015114	ENSSSAP00000048779	annotation not available	Ribonuclease H2 subunit B isoform X1.	0.988
ENSSSAP00000015114	rnh2c	ENSSSAP00000015114	ENSSSAP00000003850	annotation not available	Ribonuclease H2 subunit C.	0.962
ENSSSAP00000015114	samhd1	ENSSSAP00000015114	ENSSSAP00000108450	annotation not available	Deoxynucleoside triphosphate triphosphohydrolase SAMHD1 isoform X2.	0.588
ENSSSAP00000066677	ENSSSAP00000014978	ENSSSAP00000066677	ENSSSAP00000014978	Deoxynucleoside triphosphate triphosphohydrolase SAMHD1-like.	Ribonuclease H2, subunit B.	0.583
ENSSSAP00000066677	ENSSSAP00000015114	ENSSSAP00000066677	ENSSSAP00000015114	Deoxynucleoside triphosphate triphosphohydrolase SAMHD1-like.	annotation not available	0.588
ENSSSAP00000066677	LOC106564474	ENSSSAP00000066677	ENSSSAP00000014400	Deoxynucleoside triphosphate triphosphohydrolase SAMHD1-like.	Ribonuclease; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family.	0.588
ENSSSAP00000066677	rnaseh2b	ENSSSAP00000066677	ENSSSAP00000048779	Deoxynucleoside triphosphate triphosphohydrolase SAMHD1-like.	Ribonuclease H2 subunit B isoform X1.	0.583