STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PPIEPeptidyl-prolyl cis-trans isomerase E; Catalyzes the cis-trans isomerization of proline imidic peptide bonds in proteins; Belongs to the cyclophilin-type PPIase family. PPIase E subfamily. (195 aa)    
Predicted Functional Partners:
aqr
Intron-binding protein aquarius.
    
 0.999
LOC106607544
pre-mRNA-splicing factor SYF1-like.
   
 0.997
syf1
Salmo salar Pre-mRNA-splicing factor SYF1 (syf1), mRNA.
   
 0.997
LOC106566276
LOW QUALITY PROTEIN: pre-mRNA-splicing factor ISY1 homolog.
   
 0.994
LOC106571265
Crooked neck-like protein 1.
   
 0.992
LOC106607683
Crooked neck-like protein 1.
   
 0.992
bud31
Protein BUD31 homolog.
   
 0.989
LOC106595689
Protein BUD31 homolog.
   
 0.989
snw1
LOW QUALITY PROTEIN: SNW domain-containing protein 1.
   
 0.988
SNW1
SNW domain-containing protein 1-like.
   
 0.988
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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