STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC100380754Coiled-coil domain-containing protein 6. (455 aa)    
Predicted Functional Partners:
LOC106583911
Serine/threonine-protein phosphatase.
   
 
 0.729
PPP4C
Serine/threonine-protein phosphatase 4 catalytic subunit B.
    
 
 0.726
LOC106612458
Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform.
    
 
 0.718
PPP4R1
Serine/threonine-protein phosphatase 4 regulatory subunit 1-like isoform X1.
    
 
 0.590
LOC106583689
Serine/threonine-protein phosphatase 4 regulatory subunit 1-like isoform X2.
    
 
 0.590
LOC106565070
Serine/threonine-protein phosphatase 4 regulatory subunit 1-like isoform X1.
    
 
 0.590
LOC106579644
Serine/threonine-protein phosphatase 4 regulatory subunit 1-like isoform X1.
    
 
 0.590
ENSSSAP00000046041
LisH domain and HEAT repeat-containing protein KIAA1468 homolog.
   
 
 0.555
kiaa1468
lisH domain and HEAT repeat-containing protein KIAA1468 homolog isoform X1.
    
 
 0.549
ENSSSAP00000012992
Ret proto-oncogene receptor tyrosine kinase.
      
 0.518
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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