STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106564386-2Parvalbumin alpha; Belongs to the parvalbumin family. (214 aa)    
Predicted Functional Partners:
trpc1
Short transient receptor potential channel 1; Belongs to the transient receptor (TC 1.A.4) family.
    
 0.844
NEFL
Neurofilament light polypeptide-like; Belongs to the intermediate filament family.
    
 0.823
nefl
Neurofilament light polypeptide isoform X1; Belongs to the intermediate filament family.
    
 0.812
ASIC1
Acid-sensing ion channel 1-like; Belongs to the amiloride-sensitive sodium channel (TC 1.A.6) family.
      
 0.811
LOC106574738
Peripheral plasma membrane protein CASK-like.
    
 0.726
ENSSSAP00000105696
Calcium/calmodulin-dependent serine protein kinase b.
    
 0.726
cask
Peripheral plasma membrane protein CASK isoform X10; Belongs to the MAGUK family.
    
 0.726
CASK
Peripheral plasma membrane protein CASK-like isoform X11; Belongs to the MAGUK family.
    
 0.726
s100b
S100 calcium binding protein, beta (Neural) isoform X1; Belongs to the S-100 family.
   
 
 0.676
LOC106574292
Calcium binding protein beta; Belongs to the S-100 family.
   
 
 0.676
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.