STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106600428GATA-binding factor 6-B-like isoform X1. (515 aa)    
Predicted Functional Partners:
LOC106612166
Homeobox protein Nkx-2.5-like.
   
 0.874
LOC106604305
Homeobox protein Nkx-2.5-like.
   
 0.874
lmo2
Rhombotin-2.
    
 0.852
LOC106583772
LIM and cysteine-rich domains protein 1-like.
    
 0.752
LOC106566223
LIM and cysteine-rich domains protein 1-like.
    
 0.752
ENSSSAP00000012706
Zinc finger protein, FOG family member 1.
   
 0.748
zfpm1
Zinc finger protein ZFPM1 isoform X1.
   
 0.748
ENSSSAP00000029131
Zinc finger protein, FOG family member 2a.
    
 0.724
ccm2
Cerebral cavernous malformations 2 protein isoform X1.
    
 
 0.724
LOC106605482
Zinc finger protein ZFPM2-like.
    
 0.724
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.