STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106589732rRNA-processing protein FCF1 homolog. (200 aa)    
Predicted Functional Partners:
LOC106563613
U3 small nucleolar RNA-associated protein 14 homolog A-like.
   
 0.998
imp3
U3 small nucleolar ribonucleoprotein protein IMP3.
   
 0.998
utp3
Something about silencing protein 10 isoform X2.
   
 0.998
utp20
Small subunit processome component 20 homolog.
   
 0.997
wdr46
WD repeat-containing protein 46.
   
 0.997
ngdn
Neuroguidin.
   
 0.997
noc4l
Nucleolar complex protein 4 homolog.
   
 0.995
nop14
Nucleolar protein 14 isoform X1.
   
 0.995
utp15
U3 small nucleolar RNA-associated protein 15 homolog.
   
 0.995
LOC106582991
U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.
   
 0.995
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.