STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106585095Tau-tubulin kinase 1-like isoform X3. (1259 aa)    
Predicted Functional Partners:
ENSSSAP00000011486
LTV1 ribosome biogenesis factor.
    
 0.842
ltv1l
Protein LTV1 homolog isoform X1.
    
 0.842
riok2
Serine/threonine-protein kinase RIO2.
    
 0.828
bysl
Bystin-like.
    
 0.784
ENSSSAP00000118277
annotation not available
    
 0.784
LOC106581168
LOW QUALITY PROTEIN: pre-rRNA-processing protein TSR1 homolog.
    
 0.718
LOC106613038
pre-rRNA-processing protein TSR1 homolog.
    
 0.718
LOC106562814
RNA-binding protein NOB1; May play a role in mRNA degradation. Belongs to the NOB1 family.
    
 0.689
NOB1
RNA-binding protein NOB1; May play a role in mRNA degradation. Belongs to the NOB1 family.
    
 0.689
riok1
Serine/threonine-protein kinase RIO1; Belongs to the protein kinase superfamily. RIO-type Ser/Thr kinase family.
    
 0.606
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
Server load: low (26%) [HD]