LOC106599909 protein (Salmo salar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC106599909

Interferon regulatory factor 4-like. (494 aa)

Predicted Functional Partners:

irf1

0.612

irf1-2

0.610

myd88

0.559

LOC106563523

0.507

LOC106587480

0.507

LOC106612458

0.485

crtam

0.459

ENSSSAP00000041851

0.457

sting1

0.457

LOC106608924

0.452

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSSAP00000041851	LOC106599909	ENSSSAP00000041851	ENSSSAP00000004030	annotation not available	Interferon regulatory factor 4-like.	0.457
ENSSSAP00000041851	irf1	ENSSSAP00000041851	ENSSSAP00000064347	annotation not available	Interferon regulatory factor.	0.481
ENSSSAP00000041851	irf1-2	ENSSSAP00000041851	ENSSSAP00000082776	annotation not available	Interferon regulatory factor.	0.481
LOC106563523	LOC106599909	ENSSSAP00000015654	ENSSSAP00000004030	Transcription factor PU.1-like isoform X2.	Interferon regulatory factor 4-like.	0.507
LOC106563523	LOC106608924	ENSSSAP00000015654	ENSSSAP00000003652	Transcription factor PU.1-like isoform X2.	Histone acetyltransferase p300-like isoform X2.	0.622
LOC106563523	irf1	ENSSSAP00000015654	ENSSSAP00000064347	Transcription factor PU.1-like isoform X2.	Interferon regulatory factor.	0.680
LOC106563523	irf1-2	ENSSSAP00000015654	ENSSSAP00000082776	Transcription factor PU.1-like isoform X2.	Interferon regulatory factor.	0.680
LOC106587480	LOC106599909	ENSSSAP00000073754	ENSSSAP00000004030	Transcription factor PU.1-like.	Interferon regulatory factor 4-like.	0.507
LOC106587480	LOC106608924	ENSSSAP00000073754	ENSSSAP00000003652	Transcription factor PU.1-like.	Histone acetyltransferase p300-like isoform X2.	0.622
LOC106587480	irf1	ENSSSAP00000073754	ENSSSAP00000064347	Transcription factor PU.1-like.	Interferon regulatory factor.	0.680
LOC106587480	irf1-2	ENSSSAP00000073754	ENSSSAP00000082776	Transcription factor PU.1-like.	Interferon regulatory factor.	0.680
LOC106599909	ENSSSAP00000041851	ENSSSAP00000004030	ENSSSAP00000041851	Interferon regulatory factor 4-like.	annotation not available	0.457
LOC106599909	LOC106563523	ENSSSAP00000004030	ENSSSAP00000015654	Interferon regulatory factor 4-like.	Transcription factor PU.1-like isoform X2.	0.507
LOC106599909	LOC106587480	ENSSSAP00000004030	ENSSSAP00000073754	Interferon regulatory factor 4-like.	Transcription factor PU.1-like.	0.507
LOC106599909	LOC106608924	ENSSSAP00000004030	ENSSSAP00000003652	Interferon regulatory factor 4-like.	Histone acetyltransferase p300-like isoform X2.	0.452
LOC106599909	LOC106612458	ENSSSAP00000004030	ENSSSAP00000069240	Interferon regulatory factor 4-like.	Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform.	0.485
LOC106599909	crtam	ENSSSAP00000004030	ENSSSAP00000085194	Interferon regulatory factor 4-like.	Cytotoxic and regulatory T-cell molecule.	0.459
LOC106599909	irf1	ENSSSAP00000004030	ENSSSAP00000064347	Interferon regulatory factor 4-like.	Interferon regulatory factor.	0.612
LOC106599909	irf1-2	ENSSSAP00000004030	ENSSSAP00000082776	Interferon regulatory factor 4-like.	Interferon regulatory factor.	0.610
LOC106599909	myd88	ENSSSAP00000004030	ENSSSAP00000080060	Interferon regulatory factor 4-like.	Myeloid differentiation primary response protein MyD88; Adapter protein involved in the Toll-like receptor and IL-1 receptor signaling pathway in the innate immune response.	0.559