STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
stmn4Stathmin; Belongs to the stathmin family. (175 aa)    
Predicted Functional Partners:
LOC106563484
Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.
   
 
 0.722
LOC106603148
Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.
   
 
 0.722
SLC32A1
Vesicular inhibitory amino acid transporter-like.
   
 
 0.644
LOC106566112
Vesicular inhibitory amino acid transporter.
   
 
 0.643
LOC106567879
Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-2-like.
     
 0.639
LOC100380691
Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-2.
     
 0.639
gpn1
GPN-loop GTPase; Small GTPase required for proper nuclear import of RNA polymerase II (RNAPII). May act at an RNAP assembly step prior to nuclear import.
    
 
 0.559
LOC106611173
Ral GTPase-activating protein subunit alpha-1-like isoform X4.
     
 0.543
ralgapa1
Ral GTPase-activating protein subunit alpha-1 isoform X1.
     
 0.543
LOC106560445
Breast cancer metastasis-suppressor 1 homolog isoform X2.
      
 0.530
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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