STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ROGDIProtein rogdi homolog. (291 aa)    
Predicted Functional Partners:
LOC100286620
dmX-like protein 2.
    
 
 0.960
ENSSSAP00000077255
Dmx-like 2.
    
 
 0.960
dmxl1
dmX-like protein 1 isoform X1.
    
 
 0.960
LOC106561370
V-type proton ATPase subunit E 1-like.
    
 
 0.936
LOC106576269
V-type proton ATPase subunit E 1-like.
    
 
 0.936
LOC100136392
Vacuolar proton pump subunit B; Non-catalytic subunit of the peripheral V1 complex of vacuolar ATPase; Belongs to the ATPase alpha/beta chains family.
   
 
 0.879
LOC106563054
Vacuolar proton pump subunit B; Non-catalytic subunit of the peripheral V1 complex of vacuolar ATPase; Belongs to the ATPase alpha/beta chains family.
   
 
 0.879
vatb2
Salmo salar Vacuolar ATP synthase subunit B, brain isoform (vatb2), mRNA.
   
 
 0.879
SKP1
S-phase kinase associated protein 1.
    
 
 0.857
SKP1-2
S-phase kinase-associated protein 1; Belongs to the SKP1 family.
    
 
 0.857
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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