STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106604441NF-kappa-B-activating protein-like. (259 aa)    
Predicted Functional Partners:
LOC106567678
PRKR-interacting protein 1 homolog.
   
 0.958
sde2
C1orf55 homolog.
    
 0.955
LOC106604197
pre-mRNA-splicing factor SLU7-like.
   
 0.949
LOC106613690
Protein FAM32A-like.
    
 0.918
fam32a
FAM32A-like.
    
 0.918
LOC106586461
pre-mRNA-splicing factor CWC22 homolog isoform X2.
   
  0.888
LOC106582271
pre-mRNA-splicing factor CWC22 homolog.
   
  0.888
DDX41
Probable ATP-dependent RNA helicase DDX41.
    
  0.884
cssa01h9orf78
CI078 protein.
   
 
  0.875
dhx34
Probable ATP-dependent RNA helicase DHX34.
   
 0.860
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.