STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106613668Nicalin-1-like isoform X1. (573 aa)    
Predicted Functional Partners:
ccdc47
Coiled-coil domain-containing protein 47.
    
 
 0.960
tmco1
Calcium load-activated calcium channel; Calcium-selective channel required to prevent calcium stores from overfilling.
   
 
 0.951
tm147
Transmembrane protein 147.
    
 
 0.926
LOC106605633
Transmembrane protein 147.
    
 
 0.926
rpl18
60S ribosomal protein L18.
    
   0.891
RL35A
60S ribosomal protein L35a.
    
   0.891
rl4a
60S ribosomal protein L4-A.
    
   0.825
RPL4
Ribosomal protein L4.
    
   0.825
ENSSSAP00000003058
annotation not available
    
 
 0.806
LOC106564596
Transmembrane channel-like protein.
    
 
 0.806
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.