LOC106609469 protein (Salmo salar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC106609469

Mitochondrial inner membrane protease ATP23; Belongs to the peptidase M76 family. (234 aa)

Predicted Functional Partners:

phb

0.661

LOC106607260

0.661

LOC106565560

0.649

LOC106565809

0.649

LOC106582923

0.649

LOC106573249

0.630

ATP6

0.629

oma1

0.629

timm10

0.602

ENSSSAP00000034099

0.602

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ATP6	LOC106573249	ENSSSAP00000000007	ENSSSAP00000083237	ATP synthase subunit a; Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subuni [...]	Mitochondrial inner membrane protease subunit 2-like isoform X1.	0.409
ATP6	LOC106609469	ENSSSAP00000000007	ENSSSAP00000004795	ATP synthase subunit a; Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subuni [...]	Mitochondrial inner membrane protease ATP23; Belongs to the peptidase M76 family.	0.629
ATP6	oma1	ENSSSAP00000000007	ENSSSAP00000053226	ATP synthase subunit a; Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subuni [...]	Metalloendopeptidase OMA1, mitochondrial isoform X1.	0.594
ENSSSAP00000034099	LOC106565560	ENSSSAP00000034099	ENSSSAP00000030403	annotation not available	Mitochondrial intermembrane space import and assembly protein 40-A-like.	0.845
ENSSSAP00000034099	LOC106565809	ENSSSAP00000034099	ENSSSAP00000118384	annotation not available	Mitochondrial intermembrane space import and assembly protein 40-like isoform X1.	0.866
ENSSSAP00000034099	LOC106582923	ENSSSAP00000034099	ENSSSAP00000121026	annotation not available	Mitochondrial intermembrane space import and assembly protein 40-like.	0.866
ENSSSAP00000034099	LOC106609469	ENSSSAP00000034099	ENSSSAP00000004795	annotation not available	Mitochondrial inner membrane protease ATP23; Belongs to the peptidase M76 family.	0.602
LOC106565560	ENSSSAP00000034099	ENSSSAP00000030403	ENSSSAP00000034099	Mitochondrial intermembrane space import and assembly protein 40-A-like.	annotation not available	0.845
LOC106565560	LOC106609469	ENSSSAP00000030403	ENSSSAP00000004795	Mitochondrial intermembrane space import and assembly protein 40-A-like.	Mitochondrial inner membrane protease ATP23; Belongs to the peptidase M76 family.	0.649
LOC106565560	timm10	ENSSSAP00000030403	ENSSSAP00000004523	Mitochondrial intermembrane space import and assembly protein 40-A-like.	Mitochondrial import inner membrane translocase subunit Tim10.	0.845
LOC106565809	ENSSSAP00000034099	ENSSSAP00000118384	ENSSSAP00000034099	Mitochondrial intermembrane space import and assembly protein 40-like isoform X1.	annotation not available	0.866
LOC106565809	LOC106609469	ENSSSAP00000118384	ENSSSAP00000004795	Mitochondrial intermembrane space import and assembly protein 40-like isoform X1.	Mitochondrial inner membrane protease ATP23; Belongs to the peptidase M76 family.	0.649
LOC106565809	timm10	ENSSSAP00000118384	ENSSSAP00000004523	Mitochondrial intermembrane space import and assembly protein 40-like isoform X1.	Mitochondrial import inner membrane translocase subunit Tim10.	0.866
LOC106573249	ATP6	ENSSSAP00000083237	ENSSSAP00000000007	Mitochondrial inner membrane protease subunit 2-like isoform X1.	ATP synthase subunit a; Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subuni [...]	0.409
LOC106573249	LOC106609469	ENSSSAP00000083237	ENSSSAP00000004795	Mitochondrial inner membrane protease subunit 2-like isoform X1.	Mitochondrial inner membrane protease ATP23; Belongs to the peptidase M76 family.	0.630
LOC106573249	oma1	ENSSSAP00000083237	ENSSSAP00000053226	Mitochondrial inner membrane protease subunit 2-like isoform X1.	Metalloendopeptidase OMA1, mitochondrial isoform X1.	0.601
LOC106582923	ENSSSAP00000034099	ENSSSAP00000121026	ENSSSAP00000034099	Mitochondrial intermembrane space import and assembly protein 40-like.	annotation not available	0.866
LOC106582923	LOC106609469	ENSSSAP00000121026	ENSSSAP00000004795	Mitochondrial intermembrane space import and assembly protein 40-like.	Mitochondrial inner membrane protease ATP23; Belongs to the peptidase M76 family.	0.649
LOC106582923	timm10	ENSSSAP00000121026	ENSSSAP00000004523	Mitochondrial intermembrane space import and assembly protein 40-like.	Mitochondrial import inner membrane translocase subunit Tim10.	0.866
LOC106607260	LOC106609469	ENSSSAP00000080302	ENSSSAP00000004795	Prohibitin.	Mitochondrial inner membrane protease ATP23; Belongs to the peptidase M76 family.	0.661