STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106588995Uncharacterized protein LOC106588995. (1364 aa)    
Predicted Functional Partners:
LOC106613619
WD repeat-containing protein 18.
   
 0.527
ENSSSAP00000095920
WD repeat domain 18.
   
 0.527
tex10
Testis-expressed sequence 10 protein.
   
 0.495
ENSSSAP00000029284
annotation not available
   
 0.495
LOC106564360
H-2 class II histocompatibility antigen, A-Q alpha chain-like.
   
  0.465
LOC106567571
H-2 class II histocompatibility antigen, A-Q alpha chain-like isoform X1.
   
  0.465
ENSSSAP00000115611
annotation not available
  
 
  0.457
pesc
Pescadillo homolog; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.
   
 0.440
LOC106585655
Pescadillo homolog; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.
   
 0.440
LOC106569300
Uncharacterized protein LOC106569300 isoform X1.
  
     0.433
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.