STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sgf29SAGA-associated factor 29 homolog isoform X1. (302 aa)    
Predicted Functional Partners:
trrap
Transformation/transcription domain-associated protein isoform X8; Belongs to the PI3/PI4-kinase family.
    
 0.979
supt3h
Transcription initiation protein SPT3 homolog.
    
 0.978
LOC106604983
Transcription initiation factor TFIID subunit 12-like.
   
 0.977
taf12
Transcription initiation factor TFIID subunit 12 isoform X1.
   
 0.977
LOC106581187
Transcriptional adapter.
    
 0.976
supt20h
Transcription factor SPT20 homolog.
    
 0.972
LOC106583669
Transcription factor SPT20 homolog isoform X3.
    
 0.972
yeats2
YEATS domain-containing protein 2.
   
 0.971
LOC106579013
Ubiquitin carboxyl-terminal hydrolase.
   
 0.966
LOC106589337
Ubiquitin carboxyl-terminal hydrolase.
   
 0.966
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.