STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106611840Protocadherin gamma-A11-like. (636 aa)    
Predicted Functional Partners:
FOXC1
Forkhead box C1.
     
 0.735
FOXC1-2
Forkhead box C1-A-like.
     
 0.735
LOC106581675
Collagen alpha-1(XVIII) chain-like isoform X2.
      
 0.723
LOC106576863
Mitogen-activated protein kinase.
      
 0.723
LOC106583028
A disintegrin and metalloproteinase with thrombospondin motifs 9-like.
    
 
 0.722
LOC106565842
A disintegrin and metalloproteinase with thrombospondin motifs 9-like.
    
 
 0.722
mapk8
Mitogen-activated protein kinase.
      
 0.621
LOC100286503
Tensin-1 isoform X6.
      
 0.550
LOC106576347
Glutamate receptor ionotropic, kainate 5-like.
   
  
 0.506
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.