STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106600749Tumor suppressor candidate 5 homolog. (201 aa)    
Predicted Functional Partners:
kif22
Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.
    
 0.637
LOC106600645
BTB/POZ domain-containing adapter for CUL3-mediated RhoA degradation protein 1-like isoform X1.
    
 
 0.598
pagr1
PAXIP1-associated glutamate-rich protein 1 isoform X2.
     
 0.594
cdipt
CDP-diacylglycerol--inositol 3-phosphatidyltransferase.
      
 0.593
LOC106600720
Glycerophosphodiester phosphodiesterase domain-containing protein 3-like.
      
 0.577
LOC106611384
Synaptosomal-associated protein; Belongs to the SNAP-25 family.
    
 0.566
ENSSSAP00000090481
annotation not available
    
 0.566
sez6l2
Seizure 6-like protein 2.
    
 0.528
LOC106583888
Seizure protein 6 homolog isoform X1.
    
 0.528
LOC106583905
Protein yippee-like 3.
      
 0.502
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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