STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106608597Ependymin-like. (217 aa)    
Predicted Functional Partners:
LOC106565880
Vomeronasal type-1 receptor.
      
 0.550
LOC106588559
Gonadotropin-releasing hormone II receptor-like; Belongs to the G-protein coupled receptor 1 family.
      
 0.493
LOC106605452
Gonadotropin-releasing hormone II receptor-like isoform X1; Belongs to the G-protein coupled receptor 1 family.
      
 0.493
tdrp
Testis development-related protein.
      
 0.439
LOC106611930
Early growth response protein; Transcriptional regulator. Recognizes and binds to the DNA sequence 5'-GCG(T/G)GGGCG-3'(EGR-site) in the promoter region of target genes. Binds double-stranded target DNA, irrespective of the cytosine methylation status. Regulates the transcription of numerous target genes, and thereby plays an important role in regulating the response to growth factors, DNA damage, and ischemia. Plays a role in the regulation of cell survival, proliferation and cell death. Belongs to the EGR C2H2-type zinc-finger protein family.
      
 0.418
LOC106604926
Early growth response protein; Transcriptional regulator. Recognizes and binds to the DNA sequence 5'-GCG(T/G)GGGCG-3'(EGR-site) in the promoter region of target genes. Binds double-stranded target DNA, irrespective of the cytosine methylation status. Regulates the transcription of numerous target genes, and thereby plays an important role in regulating the response to growth factors, DNA damage, and ischemia. Plays a role in the regulation of cell survival, proliferation and cell death. Belongs to the EGR C2H2-type zinc-finger protein family.
      
 0.418
znf518b
Zinc finger protein 518B isoform X1.
      
 0.414
EGR1
Early growth response protein 1.
      
 0.414
hal
Histidine ammonia-lyase; Belongs to the PAL/histidase family.
      
 0.412
LOC106576224
Histidine ammonia-lyase; Belongs to the PAL/histidase family.
      
 0.412
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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