STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106608599cystatin-B-like; Belongs to the cystatin family. (99 aa)    
Predicted Functional Partners:
aven
Cell death regulator Aven.
    
 0.759
LOC106573105
Aurora kinase B-like; Belongs to the protein kinase superfamily.
   
 0.744
stk6
Serine/threonine-protein kinase 6; Belongs to the protein kinase superfamily.
   
 0.744
LOC106561604
Aurora kinase B-like; Belongs to the protein kinase superfamily.
   
 0.744
LOC106562440
Pro-cathepsin H-like isoform X1; Belongs to the peptidase C1 family.
   
 0.694
LOC106561173
Pro-cathepsin H-like; Belongs to the peptidase C1 family.
   
 0.694
ENSSSAP00000066430
Cathepsin H.
   
 0.689
LOC106575069
Cytochrome c; Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain.
    
 0.685
LOC106588840
Cytochrome c iso-1/iso-2-like; Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain.
    
 0.685
ENSSSAP00000054155
annotation not available
    
 0.685
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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