STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC10660625039S ribosomal protein L12, mitochondrial-like isoform X1. (193 aa)    
Predicted Functional Partners:
LOC106612239
39S ribosomal protein L27, mitochondrial-like.
  
 
 0.999
LOC106605701
39S ribosomal protein L17, mitochondrial-like isoform X1; Belongs to the bacterial ribosomal protein bL17 family.
  
 
 0.999
mrpl9
39S ribosomal protein L9, mitochondrial isoform X1.
  
 
 0.999
RL23A
60S ribosomal protein L23a; Belongs to the universal ribosomal protein uL23 family.
  
 
 0.999
LOC106587095
39S ribosomal protein L21, mitochondrial-like isoform X1.
   
 
 0.999
ENSSSAP00000019248
annotation not available
  
 
 0.999
rl23
60S ribosomal protein L23; Belongs to the universal ribosomal protein uL14 family.
  
 
 0.999
mrpl17
Salmo salar ribosomal protein L17 mitochondrial-like protein (mrpl17), mRNA.
  
 
 0.999
LOC106574616
28S ribosomal protein S9, mitochondrial-like.
  
 
 0.999
mrpl20
39S ribosomal protein L20, mitochondrial; Belongs to the bacterial ribosomal protein bL20 family.
  
 
 0.999
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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