STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106569430Transitional endoplasmic reticulum ATPase-like; Belongs to the AAA ATPase family. (817 aa)    
Predicted Functional Partners:
LOC106599567
UBX domain-containing protein 7-like isoform X1.
   
 0.998
LOC106568865
UBX domain-containing protein 7-like.
   
 0.998
nploc4
Nuclear protein localization protein 4 homolog.
   
 0.988
LOC106589896
Nuclear protein localization protein 4 homolog isoform X3.
   
 0.988
ubxn2a
UBX domain-containing protein 2A isoform X1.
   
 0.985
UBXN4
UBX domain-containing protein 4-like isoform X1.
   
 0.981
LOC106572118
NSFL1 cofactor p47-like isoform X2.
   
 0.977
LOC106566439
NSFL1 cofactor p47-like isoform X1.
   
 0.977
LOC106612087
UBX domain-containing protein 1-like.
   
 0.976
vcpkmt
CN138 protein.
   
 0.974
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.