LOC106609398 protein (Salmo salar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC106609398

Endoplasmic reticulum-Golgi intermediate compartment protein 2-like isoform X1. (407 aa)

Predicted Functional Partners:

gtpbp3

0.990

ergi3

0.945

LOC106565050

0.945

trmu

0.907

LOC106567674

0.862

LOC106603453

0.862

derl2

0.862

ENSSSAP00000027327

0.682

ENSSSAP00000033387

0.682

LOC106571688

0.682

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSSAP00000027327	LOC106567674	ENSSSAP00000027327	ENSSSAP00000016453	annotation not available	Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family.	0.929
ENSSSAP00000027327	LOC106603453	ENSSSAP00000027327	ENSSSAP00000074270	annotation not available	Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family.	0.929
ENSSSAP00000027327	LOC106609398	ENSSSAP00000027327	ENSSSAP00000005494	annotation not available	Endoplasmic reticulum-Golgi intermediate compartment protein 2-like isoform X1.	0.682
ENSSSAP00000027327	derl2	ENSSSAP00000027327	ENSSSAP00000087476	annotation not available	Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family.	0.929
ENSSSAP00000027327	gtpbp3	ENSSSAP00000027327	ENSSSAP00000031511	annotation not available	tRNA modification GTPase GTPBP3, mitochondrial isoform X1; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.	0.419
ENSSSAP00000033387	LOC106567674	ENSSSAP00000033387	ENSSSAP00000016453	annotation not available	Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family.	0.929
ENSSSAP00000033387	LOC106603453	ENSSSAP00000033387	ENSSSAP00000074270	annotation not available	Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family.	0.929
ENSSSAP00000033387	LOC106609398	ENSSSAP00000033387	ENSSSAP00000005494	annotation not available	Endoplasmic reticulum-Golgi intermediate compartment protein 2-like isoform X1.	0.682
ENSSSAP00000033387	derl2	ENSSSAP00000033387	ENSSSAP00000087476	annotation not available	Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family.	0.929
ENSSSAP00000033387	gtpbp3	ENSSSAP00000033387	ENSSSAP00000031511	annotation not available	tRNA modification GTPase GTPBP3, mitochondrial isoform X1; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.	0.419
LOC106565050	LOC106567674	ENSSSAP00000104854	ENSSSAP00000016453	Endoplasmic reticulum-Golgi intermediate compartment protein 3.	Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family.	0.474
LOC106565050	LOC106603453	ENSSSAP00000104854	ENSSSAP00000074270	Endoplasmic reticulum-Golgi intermediate compartment protein 3.	Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family.	0.474
LOC106565050	LOC106609398	ENSSSAP00000104854	ENSSSAP00000005494	Endoplasmic reticulum-Golgi intermediate compartment protein 3.	Endoplasmic reticulum-Golgi intermediate compartment protein 2-like isoform X1.	0.945
LOC106565050	derl2	ENSSSAP00000104854	ENSSSAP00000087476	Endoplasmic reticulum-Golgi intermediate compartment protein 3.	Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family.	0.474
LOC106565050	gtpbp3	ENSSSAP00000104854	ENSSSAP00000031511	Endoplasmic reticulum-Golgi intermediate compartment protein 3.	tRNA modification GTPase GTPBP3, mitochondrial isoform X1; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.	0.990
LOC106565050	trmu	ENSSSAP00000104854	ENSSSAP00000079875	Endoplasmic reticulum-Golgi intermediate compartment protein 3.	Mitochondrial tRNA-specific 2-thiouridylase 1.	0.907
LOC106567674	ENSSSAP00000027327	ENSSSAP00000016453	ENSSSAP00000027327	Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family.	annotation not available	0.929
LOC106567674	ENSSSAP00000033387	ENSSSAP00000016453	ENSSSAP00000033387	Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family.	annotation not available	0.929
LOC106567674	LOC106565050	ENSSSAP00000016453	ENSSSAP00000104854	Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family.	Endoplasmic reticulum-Golgi intermediate compartment protein 3.	0.474
LOC106567674	LOC106571688	ENSSSAP00000016453	ENSSSAP00000033727	Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family.	Protein sel-1 homolog 1-like isoform X1.	0.972