STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
stx1bSalmo salar syntaxin 1B (stx1b), mRNA. (291 aa)    
Predicted Functional Partners:
vamp3
Vesicle-associated membrane protein 3.
    
 0.954
LOC106611384
Synaptosomal-associated protein; Belongs to the SNAP-25 family.
   
 0.927
ENSSSAP00000090481
annotation not available
   
 0.927
LOC106585118
Vesicle-associated membrane protein 8-like isoform X1.
    
 0.861
ENSSSAP00000022163
Syntaxin binding protein 1a.
   
 0.850
LOC106563129
Syntaxin-binding protein 1-like isoform X1; Belongs to the STXBP/unc-18/SEC1 family.
   
 0.850
ENSSSAP00000044139
Zgc:92912.
   
 0.824
ENSSSAP00000070508
Vesicle-associated membrane protein 2.
   
 0.824
ENSSSAP00000084506
Vesicle-associated membrane protein 2-like.
   
 0.824
LOC106570163
Vesicle-associated membrane protein 2-like.
   
 0.824
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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