STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106601019Tetratricopeptide repeat protein 25-like. (545 aa)    
Predicted Functional Partners:
armc4
Armadillo repeat-containing protein 4.
  
 
 0.895
LOC106612979
Cilia- and flagella-associated protein 45-like.
   
 
 0.837
ENSSSAP00000000387
Coiled-coil domain containing 151.
   
 0.834
LOC106564573
Coiled-coil domain-containing protein 151-like.
   
 0.834
ENSSSAP00000025086
EF-hand calcium binding domain 1.
   
 0.820
efcab1
EF-hand calcium-binding domain-containing protein 1.
   
 0.820
armc3
Armadillo repeat-containing protein 3.
   
 
 0.819
tekt2
Tektin-2 isoform X1.
   
 
 0.813
cfap53
Cilia- and flagella-associated protein 53.
    
 0.805
LOC106572211
Coiled-coil domain-containing protein 114-like isoform X1.
   
 
 0.796
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.