STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106610874Uncharacterized protein C15orf52 homolog isoform X1. (703 aa)    
Predicted Functional Partners:
LOC106613619
WD repeat-containing protein 18.
   
 0.527
ENSSSAP00000095920
WD repeat domain 18.
   
 0.527
tex10
Testis-expressed sequence 10 protein.
   
 0.495
ENSSSAP00000029284
annotation not available
   
 0.495
LOC106564360
H-2 class II histocompatibility antigen, A-Q alpha chain-like.
   
  0.465
LOC106567571
H-2 class II histocompatibility antigen, A-Q alpha chain-like isoform X1.
   
  0.465
DCTN5
Dynactin subunit 5.
    
 0.452
pesc
Pescadillo homolog; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.
   
 0.440
LOC106585655
Pescadillo homolog; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.
   
 0.440
nol9
Polynucleotide 5'-hydroxyl-kinase NOL9 isoform X1.
    
 0.418
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.