STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSSSAP00000005731annotation not available (134 aa)    
Predicted Functional Partners:
exosc3
Exosome complex component RRP40.
    
 
 0.884
LOC106578995
MMS19 nucleotide excision repair protein homolog isoform X1.
   
 
 0.680
LOC106589352
MMS19 nucleotide excision repair protein homolog isoform X1.
   
 
 0.680
dcup
Uroporphyrinogen decarboxylase; Belongs to the uroporphyrinogen decarboxylase family.
  
 
 0.633
ENDOV
Endonuclease V-like isoform X1.
  
 
 0.633
ENSSSAP00000048213
annotation not available
  
 
 0.633
LOC106569255
Uroporphyrinogen decarboxylase; Belongs to the uroporphyrinogen decarboxylase family.
  
 
 0.633
trmu
Mitochondrial tRNA-specific 2-thiouridylase 1.
  
  
 0.619
EPRS1
Bifunctional glutamate/proline--tRNA ligase-like.
  
  
 0.599
LOC106561878
Bifunctional glutamate/proline--tRNA ligase-like isoform X1.
  
  
 0.599
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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