STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106613680Retinal homeobox protein Rx1-like isoform X2. (323 aa)    
Predicted Functional Partners:
LOC106576285
Achaete-scute homolog 1a.
   
 0.681
LOC106586884
Oligodendrocyte transcription factor 2-like.
      
 0.629
LOC106582489
Oligodendrocyte transcription factor 2-like.
      
 0.629
LOC106578844
RPE-retinal G protein-coupled receptor-like.
    
 
 0.467
LOC106589928
RPE-retinal G protein-coupled receptor-like.
    
 
 0.467
NR2E3
Photoreceptor-specific nuclear receptor-like.
      
 0.447
LOC106566047
Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family.
    
 
 0.426
figla
Factor in the germline alpha.
   
 0.409
LOC106571797
Nuclear receptor subfamily 2 group E member 1-like isoform X2.
      
 0.408
LOC100196684
Probable C->U-editing enzyme APOBEC-2.
      
 0.405
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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