STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106607416Perforin-1-like. (568 aa)    
Predicted Functional Partners:
stx1b
Salmo salar syntaxin 1B (stx1b), mRNA.
     
 0.735
LOC106600813
Syntaxin-1B; Belongs to the syntaxin family.
     
 0.735
LOC106579303
Syntaxin-4-like; Belongs to the syntaxin family.
     
 0.735
LOC106607045
Low-density lipoprotein receptor-like.
     
 0.723
ENSSSAP00000089740
Low density lipoprotein receptor a.
     
 0.723
LOC106601127
40S ribosomal protein S11; Belongs to the universal ribosomal protein uS17 family.
    
 
 0.565
C1QC-2
Complement C1q subcomponent subunit C-like.
   
  0.467
tep1
Telomerase protein component 1.
    
 0.457
cxb5
Gap junction beta-5 protein.
  
 
  0.426
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.