STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hdac1Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily. (498 aa)    
Predicted Functional Partners:
rb1
Retinoblastoma-associated protein.
   
 0.987
LOC106590004
AT-rich interactive domain-containing protein 4B-like.
   
 0.978
LOC106578775
AT-rich interactive domain-containing protein 4B-like isoform X1.
   
 0.978
arid4a
AT-rich interactive domain-containing protein 4A.
   
 0.978
LOC106611238
AT-rich interactive domain-containing protein 4A-like isoform X4.
   
 0.978
ENSSSAP00000103251
AT-rich interactive domain-containing protein 4B-like.
   
 0.978
LOC106611936
C-terminal-binding protein 1-like isoform X2; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
    
 0.962
LOC106577038
YLP motif-containing protein 1 isoform X1.
    
 0.962
LOC106604969
C-terminal-binding protein 1-like; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
    
 0.962
LOC106603903
C-terminal-binding protein 2-like isoform X2; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
    
 0.962
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.