STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106591625Echinoderm microtubule-associated protein-like 5 isoform X3. (1972 aa)    
Predicted Functional Partners:
ift140
Intraflagellar transport protein 140 homolog isoform X2.
    
 0.779
LOC106572977
Transcription initiation factor TFIID subunit 2.
    
 0.757
md2l1
Mitotic spindle assembly checkpoint protein MAD2A.
   
 0.754
LOC106577502
Mitotic spindle assembly checkpoint protein MAD2A-like.
   
 0.754
LOC106593292
WD repeat-containing protein 19-like.
    
 0.751
sympk
Symplekin.
    
 0.740
wdr35
WD repeat-containing protein 35.
    
 0.723
ENSSSAP00000025737
annotation not available
   
 0.705
LOC106582182
E3 SUMO-protein ligase RanBP2-like isoform X4.
   
 0.705
LOC106586530
E3 SUMO-protein ligase RanBP2-like isoform X1.
   
 0.705
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.