STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tm107Transmembrane protein 107-like isoform X1. (149 aa)    
Predicted Functional Partners:
b9d1
B9 domain-containing protein 1.
   
 
 0.672
tmem231
Transmembrane protein 231.
   
 
 0.639
cc2d2a
Coiled-coil and C2 domain-containing protein 2A isoform X1.
      
 0.594
nphp3
Nephrocystin-3 isoform X1.
      
 0.594
TMEM216
Transmembrane protein 216.
   
 
 0.587
tmm80
Transmembrane protein 80 isoform X1.
   
 
 0.587
NPHP4
Nephrocystin-4 isoform X3.
      
 0.585
rpgrip1l
Protein fantom.
      
 0.571
LOC106563631
B9 domain-containing protein 2.
   
  
 0.538
TMEM80
Transmembrane protein 80 isoform X2.
   
 
 0.513
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.