STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106605027PR domain zinc finger protein 13-like. (624 aa)    
Predicted Functional Partners:
LOC106599594
Pancreas transcription factor 1 subunit alpha-like.
   
 
 0.520
LOC106569290
Pancreas transcription factor 1 subunit alpha.
   
 
 0.520
pole
DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.
   
 
 0.508
ENSSSAP00000112721
annotation not available
   
 
 0.508
LOC106571487
cyclin-C-like; Belongs to the cyclin family.
    
 
 0.492
ENSSSAP00000023127
ADP-ribosylation factor-like 15b.
    
 0.436
ARL15
ADP-ribosylation factor-like 15 isoform X2.
    
 0.436
ENSSSAP00000031190
annotation not available
    
 0.436
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.