STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
trmt1tRNA (guanine(26)-N(2))-dimethyltransferase. (629 aa)    
Predicted Functional Partners:
LOC106588694
tRNA (Cytosine(34)-C(5))-methyltransferase-like isoform X2; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.
   
 
 0.774
ENSSSAP00000082211
tRNA methyltransferase 6.
   
  
 0.749
noc2l
Nucleolar complex protein 2 homolog.
   
    0.688
dus3l
tRNA-dihydrouridine(47) synthase [NAD(P)(+)].
   
 
 0.678
LOC106601810
Transducin beta-like protein 3.
   
    0.675
ENSSSAP00000008105
Transducin (beta)-like 3.
   
    0.675
LOC100195964
Transducin beta-like protein 3.
   
    0.675
wdr46
WD repeat-containing protein 46.
   
    0.675
ENSSSAP00000077604
annotation not available
   
 
 0.668
mettl1
tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.
   
 
 0.668
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.